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    mRpS5 mitochondrial ribosomal protein S5 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 3355089, updated on 9-Dec-2024

    Summary

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    Official Symbol
    mRpS5provided by FlyBase
    Official Full Name
    mitochondrial ribosomal protein S5provided by FlyBase
    Primary source
    FLYBASE:FBgn0287187
    Locus tag
    Dmel_CG40049
    See related
    AllianceGenome:FB:FBgn0287187
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    80Fa; BcDNA:RE47909; CG40049; Dmel\CG40049; l(3)80Fa; l(3)Lh8; l8; MRP-S5; mRps5; MrpS5
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in several structures, including adult head; adult heart; embryonic/larval midgut primordium; gut section; and larval muscle cell. Orthologous to human MRPS5 (mitochondrial ribosomal protein S5). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See mRpS5 in Genome Data Viewer
    Location:
    80F9-80F9; 3-47 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (24537236..24543534)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (24530335..24536634)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene neverland Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic Analysis of the Heterochromatin of Chromosome 3 in Drosophila Melanogaster. II. Vital Loci Identified through Ems Mutagenesis. Marchant GE, et al. Genetics, 1988 Oct. PMID 17246481, Free PMC Article
    2. Cytogenetic analysis of the third chromosome heterochromatin of Drosophila melanogaster. Koryakov DE, et al. Genetics, 2002 Feb. PMID 11861557, Free PMC Article
    3. Identification of regions interacting with ovoD mutations: potential new genes involved in germline sex determination or differentiation in Drosophila melanogaster. Pauli D, et al. Genetics, 1995 Feb. PMID 7713427, Free PMC Article
    4. Essential genes in proximal 3L heterochromatin of Drosophila melanogaster. Schulze S, et al. Mol Gen Genet, 2001 Feb. PMID 11254125
    5. Essential genes in autosomal heterochromatin of Drosophila melanogaster. Sinclair DA, et al. Genetica, 2000. PMID 11293800

    See all (40) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    • Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mitochondrial small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of mitochondrial small ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    part_of mitochondrial small ribosomal subunit TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    mitochondrial ribosomal protein S5
    Names
    CG40049-PA
    CG40049-PC
    CG40049-PD
    lethal (3) 80Fa
    lethal 8
    lethal8
    mRpS5-PA
    mRpS5-PC
    mRpS5-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      24537236..24543534
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001043187.2 → NP_001036652.1  mitochondrial ribosomal protein S5, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001036652.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYP9
      Conserved Domains (3) summary
      TIGR01021
      Location:178 → 323
      rpsE_bact; ribosomal protein S5, bacterial/organelle type
      pfam00333
      Location:171 → 235
      Ribosomal_S5; Ribosomal protein S5, N-terminal domain
      pfam03719
      Location:251 → 318
      Ribosomal_S5_C; Ribosomal protein S5, C-terminal domain

    2. NM_001043188.3 → NP_001036653.1  mitochondrial ribosomal protein S5, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001036653.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYP9
      Conserved Domains (3) summary
      TIGR01021
      Location:178 → 323
      rpsE_bact; ribosomal protein S5, bacterial/organelle type
      pfam00333
      Location:171 → 235
      Ribosomal_S5; Ribosomal protein S5, N-terminal domain
      pfam03719
      Location:251 → 318
      Ribosomal_S5_C; Ribosomal protein S5, C-terminal domain

    3. NM_001043186.2 → NP_001036651.1  mitochondrial ribosomal protein S5, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001036651.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0E8A8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0E8A8 Q0E8A8
    Q8SYP9 Q8SYP9

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