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    F39H12.3 RIIa domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 185505, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F39H12.3
    Official Full Name
    RIIa domain-containing protein
    Primary source
    WormBase:WBGene00018214
    Locus tag
    CELE_F39H12.3
    See related
    AllianceGenome:WB:WBGene00018214
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable calmodulin binding activity. Predicted to be located in membrane. Orthologous to human SPA17 (sperm autoantigenic protein 17). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F39H12.3 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    6
    Sequence:
    Chromosome: X; NC_003284.9 (838144..841493, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ANAPC4_WD40 domain-containing protein Neighboring gene Pericentrin Neighboring gene B-cell receptor CD22-like Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables calmodulin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RIIa domain-containing protein
    NP_508165.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      838144..841493 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_075764.7 → NP_508165.2  RIIa domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_508165.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20199
      Conserved Domains (2) summary
      cd12100
      Location:9 → 47
      DD_CABYR_SP17; Dimerization/Docking domain of the sperm fibrous sheath proteins, Calcium-Binding tYrosine-phosphorylation Regulated protein and Sperm Protein 17
      COG5022
      Location:142 → 205
      COG5022; Myosin heavy chain [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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