U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    MIR3667HG MIR3667 host gene [ Homo sapiens (human) ]

    Gene ID: 348645, updated on 22-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    MIR3667HGprovided by HGNC
    Official Full Name
    MIR3667 host geneprovided by HGNC
    Primary source
    HGNC:HGNC:28010
    See related
    Ensembl:ENSG00000188511 AllianceGenome:HGNC:28010
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C22orf34
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See MIR3667HG in Genome Data Viewer
    Location:
    22q13.33
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (49414524..49657519, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (49917552..50161530, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (49808173..50051167, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49637011-49637512 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49637513-49638012 Neighboring gene ribosomal protein L35 pseudogene 8 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49656771-49657286 Neighboring gene NANOG hESC enhancer GRCh37_chr22:49665229-49665768 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr22:49678386-49679585 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49686488-49687074 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49687075-49687660 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63692 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49697353-49697914 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49700204-49700897 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49746095-49746659 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49768106-49769047 Neighboring gene uncharacterized LOC124905143 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49785269-49785769 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49791359-49791860 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49812305-49812852 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49826203-49827086 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49827087-49827969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49851809-49852308 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49855123-49856121 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49856122-49857119 Neighboring gene MPRA-validated peak4517 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr22:49905853-49906607 Neighboring gene NANOG hESC enhancer GRCh37_chr22:49906712-49907238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49907765-49908290 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49917077-49917577 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49919471-49919974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49964028-49964890 Neighboring gene uncharacterized LOC124905144 Neighboring gene microRNA 3667 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49992749-49993249 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:50022001-50022961 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:50026206-50026798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:50026799-50027390 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:50040339-50041079 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:50050269-50051245 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19279 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:50054716-50055216 Neighboring gene uncharacterized LOC124905145 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:50058278-50058808 Neighboring gene MPRA-validated peak4519 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13920 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13921 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:50070999-50071498 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:50083997-50084790 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:50088046-50088546 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:50108921-50109642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:50109643-50110363 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr22:50111085-50111805 Neighboring gene uncharacterized LOC124905146 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:50112432-50112944 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:50117534-50118264 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:50118265-50118995

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality. Seppälä I, et al. Eur Heart J, 2014 Feb. PMID 24159190
    2. Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations. Xie T, et al. Neurobiol Aging, 2014 Jul. PMID 24529757
    3. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. Perry JR, et al. Nature, 2014 Oct 2. PMID 25231870, Free PMC Article
    4. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. Navarini AA, et al. Nat Commun, 2014 Jun 13. PMID 24927181
    5. High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. Uren PJ, et al. RNA Biol, 2016. PMID 26760575, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.
    EBI GWAS Catalog
    Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
    EBI GWAS Catalog
    Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.
    EBI GWAS Catalog
    Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
    EBI GWAS Catalog

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Other Names

    • MIR3667 host
    • uncharacterized protein C22orf34

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110522.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      DA235633, Z82189

    2. NR_110523.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z82189, Z97192
      Related
      ENST00000414287.6

    3. NR_171025.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z97192
      Related
      ENST00000400023.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      49414524..49657519 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      49917552..50161530 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039473.2: Suppressed sequence

      Description
      NM_001039473.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    2. NM_001289922.4: Suppressed sequence

      Description
      NM_001289922.4: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    3. NM_198851.1: Suppressed sequence

      Description
      NM_198851.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials