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    phat-5 ShKT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178811, updated on 9-Dec-2024

    Summary

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    Official Symbol
    phat-5
    Official Full Name
    ShKT domain-containing protein
    Primary source
    WormBase:WBGene00020242
    Locus tag
    CELE_T05B4.11
    See related
    AllianceGenome:WB:WBGene00020242
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in nematode pharyngeal gland morphogenesis. Is expressed in g1AL and g1AR. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See phat-5 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (4121489..4122515, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ShKT domain-containing protein Neighboring gene ShKT domain-containing protein Neighboring gene ShKT domain-containing protein Neighboring gene ncRNA Neighboring gene ShKT domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptional regulation of HLH-6-independent and subtype-specific genes expressed in the Caenorhabditis elegans pharyngeal glands. Ghai V, et al. Mech Dev, 2012 Sep-Dec. PMID 22759833
    2. The HLH-6 transcription factor regulates C. elegans pharyngeal gland development and function. Smit RB, et al. PLoS Genet, 2008 Oct. PMID 18927627, Free PMC Article
    3. A lineage-resolved cartography of microRNA promoter activity in C. elegans empowers multidimensional developmental analysis. Xu W, et al. Nat Commun, 2024 Mar 30. PMID 38555276, Free PMC Article
    4. Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways. Duchaine TF, et al. Cell, 2006 Jan 27. PMID 16439208
    5. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in nematode pharyngeal gland morphogenesis IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ShKT domain-containing protein
    NP_504148.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      4121489..4122515 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071747.7 → NP_504148.1  ShKT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504148.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16420
      Conserved Domains (1) summary
      pfam01549
      Location:122 → 154
      ShK; ShK domain-like
    Nucleotide Protein
    Heading Accession and Version

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