rnf40 ring finger protein 40 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rnf40provided by ZNC
Official Full Name: ring finger protein 40provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-6607
See related: Ensembl:ENSDARG00000054201 AllianceGenome:ZFIN:ZDB-GENE-030131-6607
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: bZ1C10.1; wu:fk48a06; zgc:103763; zgc:152796; si:rp71-1c10.1
Summary: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within chromatin organization. Predicted to be part of HULC complex. Predicted to be active in nucleus. Orthologous to human RNF40 (ring finger protein 40). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 12

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	12	NC_007123.7 (28910684..28933282)
105	previous assembly	GRCz10 (GCF_000002035.5)	12	NC_007123.6 (28795976..28818380)

Chromosome 12 - NC_007123.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info
enables ubiquitin-protein transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chromatin organization	IEA Inferred from Electronic Annotation more info
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: E3 ubiquitin-protein ligase BRE1B

Names: bZ1C10.1.2 (novel ring finger protein)

NP_001410764.1

EC 2.3.2.27

XP_068080760.1

EC 2.3.2.27

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001423835.1 → NP_001410764.1 E3 ubiquitin-protein ligase BRE1B

Status: VALIDATED

Source sequence(s)

AL732488, CT030027

Related

ENSDARP00000130936.1, ENSDART00000160939.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007123.7 Reference GRCz11 Primary Assembly

Range

28910684..28933282

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_068224659.1 → XP_068080760.1 E3 ubiquitin-protein ligase BRE1B isoform X1

Related

ENSDARP00000070816.4, ENSDART00000076342.5

Reference GRCz11 ALT_DRER_TU_1

Genomic

NW_018394849.1 Reference GRCz11 ALT_DRER_TU_1

Range

92..18275

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GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001005778.2: Suppressed sequence

Description

NM_001005778.2: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.