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    znf384b zinc finger protein 384 b [ Danio rerio (zebrafish) ]

    Gene ID: 568558, updated on 9-Dec-2024

    Summary

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    Official Symbol
    znf384bprovided by ZNC
    Official Full Name
    zinc finger protein 384 bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2855
    See related
    Ensembl:ENSDARG00000089032 AllianceGenome:ZFIN:ZDB-GENE-030131-2855
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc19g06; wu:fc19g06; zgc:158259; si:ch211-154o6.2
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in telencephalon. Orthologous to human ZNF384 (zinc finger protein 384). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See znf384b in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (21672964..21695739, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (21868712..21891890, complement)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene discoidin domain receptor tyrosine kinase 1 Neighboring gene guanine nucleotide binding protein-like 1 Neighboring gene si:ch211-154o6.3 Neighboring gene si:ch211-154o6.4 Neighboring gene COP9 constitutive photomorphogenic homolog subunit 7A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Studies Into β-Glucan Recognition in Fish Suggests a Key Role for the C-Type Lectin Pathway. Petit J, et al. Front Immunol, 2019. PMID 30863400, Free PMC Article
    2. Toxicogenomic and phenotypic analyses of bisphenol-A early-life exposure toxicity in zebrafish. Lam SH, et al. PLoS One, 2011. PMID 22194820, Free PMC Article
    3. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 384b
    Names
    nuclear matrix transcription factor 4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045163.1 → NP_001038628.1  zinc finger protein 384b

      See identical proteins and their annotated locations for NP_001038628.1

      Status: PROVISIONAL

      Source sequence(s)
      BX294670
      UniProtKB/TrEMBL
      A0A2R8QFY9, A1L1R2, Q1LXQ0
      Related
      ENSDARP00000109830.1, ENSDART00000123597.3
      Conserved Domains (3) summary
      sd00017
      Location:205 → 225
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:203 → 225
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:217 → 242
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      21672964..21695739 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009292250.4 → XP_009290525.1  zinc finger protein 384b isoform X2

      UniProtKB/TrEMBL
      A0A8M3AQI4
      Conserved Domains (3) summary
      COG5048
      Location:222 → 371
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:252 → 272
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:264 → 289
      zf-H2C2_2; Zinc-finger double domain

    2. XM_009292251.4 → XP_009290526.1  zinc finger protein 384b isoform X4

      UniProtKB/TrEMBL
      A0A8M3AI04
      Conserved Domains (3) summary
      sd00017
      Location:217 → 237
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:215 → 237
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:229 → 254
      zf-H2C2_2; Zinc-finger double domain

    3. XM_068213997.1 → XP_068070098.1  zinc finger protein 384b isoform X3

    4. XM_009292249.4 → XP_009290524.1  zinc finger protein 384b isoform X1

      UniProtKB/TrEMBL
      A0A8M3ATC2
      Conserved Domains (3) summary
      COG5048
      Location:234 → 383
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:264 → 284
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:276 → 301
      zf-H2C2_2; Zinc-finger double domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394960.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      53832..76759 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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