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    mrps18b mitochondrial ribosomal protein S18B [ Danio rerio (zebrafish) ]

    Gene ID: 550455, updated on 9-Dec-2024

    Summary

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    Official Symbol
    mrps18bprovided by ZNC
    Official Full Name
    mitochondrial ribosomal protein S18Bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-278
    See related
    Ensembl:ENSDARG00000007065 AllianceGenome:ZFIN:ZDB-GENE-050417-278
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fj45h02; zgc:112517
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within mitochondrial translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in mitochondrion. Is expressed in heart. Orthologous to human MRPS18B (mitochondrial ribosomal protein S18B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See mrps18b in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (30423141..30428901)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (30835828..30841588)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene anterior gradient 2 Neighboring gene protein phosphatase 1, regulatory subunit 10 Neighboring gene ATP-binding cassette, sub-family F (GCN20), member 1 Neighboring gene si:ch211-215a10.4 Neighboring gene BCL2 associated athanogene 6, like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cell stemness is maintained upon concurrent expression of RB and the mitochondrial ribosomal protein S18-2. Mushtaq M, et al. Proc Natl Acad Sci U S A, 2020 Jul 7. PMID 32571933, Free PMC Article
    2. A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish. Sambrook JG, et al. BMC Genomics, 2005 Nov 4. PMID 16271140, Free PMC Article
    3. Trapping cardiac recessive mutants via expression-based insertional mutagenesis screening. Ding Y, et al. Circ Res, 2013 Feb 15. PMID 23283723, Free PMC Article
    4. A Primer Genetic Toolkit for Exploring Mitochondrial Biology and Disease Using Zebrafish. Sabharwal A, et al. Genes (Basel), 2022 Jul 23. PMID 35893052, Free PMC Article
    5. Evolutionary and Expression Analyses Show Co-option of khdrbs Genes for Origin of Vertebrate Brain. Wang S, et al. Front Genet, 2017. PMID 29354154, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrial translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    small ribosomal subunit protein mS40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017759.2 → NP_001017759.1  small ribosomal subunit protein mS40

      See identical proteins and their annotated locations for NP_001017759.1

      Status: PROVISIONAL

      Source sequence(s)
      BC093356
      UniProtKB/TrEMBL
      B2GRE2, Q566S7
      Related
      ENSDARP00000014244.7, ENSDART00000023074.8
      Conserved Domains (1) summary
      pfam01084
      Location:126 → 177
      Ribosomal_S18; Ribosomal protein S18

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      30423141..30428901
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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