U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [ Danio rerio (zebrafish) ]

    Gene ID: 402808, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rrp9provided by ZNC
    Official Full Name
    ribosomal RNA processing 9, U3 small nucleolar RNA binding proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060427-1
    See related
    Ensembl:ENSDARG00000041991 AllianceGenome:ZFIN:ZDB-GENE-060427-1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    rnu3ip2
    Summary
    Predicted to enable snoRNA binding activity. Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Orthologous to human RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See rrp9 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (36215690..36230163, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (35953707..35968222, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene testis-expressed protein 264 homolog Neighboring gene glutathione peroxidase 1a Neighboring gene glutamate receptor, metabotropic 2b Neighboring gene si:ch211-213o11.11 Neighboring gene caveolin 4a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Xmrk, kras and myc transgenic zebrafish liver cancer models share molecular signatures with subsets of human hepatocellular carcinoma. Zheng W, et al. PLoS One, 2014. PMID 24633177, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables U3 snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables snoRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    U3 small nucleolar RNA-interacting protein 2
    Names
    RNA, U3 small nucleolar interacting protein 2
    ribosomal RNA processing 9, small subunit (SSU) processome component, homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001118895.1 → NP_001112367.1  U3 small nucleolar RNA-interacting protein 2

      Status: PROVISIONAL

      Source sequence(s)
      BX248230
      UniProtKB/TrEMBL
      A0A2R8RL46, A0A8M1NI67
      Related
      ENSDARP00000147720.1, ENSDART00000189782.1
      Conserved Domains (3) summary
      COG2319
      Location:114 → 445
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:134 → 435
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:145 → 190
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      36215690..36230163 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005172901.4 → XP_005172958.1  U3 small nucleolar RNA-interacting protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BKP0, F1R3Q7
      Related
      ENSDARP00000121702.1, ENSDART00000135888.2
      Conserved Domains (3) summary
      COG2319
      Location:114 → 442
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:134 → 432
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:145 → 190
      7WD40; WD40 repeat [structural motif]

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394825.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      170098..184615 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools