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    dcps decapping enzyme, scavenger [ Danio rerio (zebrafish) ]

    Gene ID: 402850, updated on 4-Jan-2025

    Summary

    Official Symbol
    dcpsprovided by ZNC
    Official Full Name
    decapping enzyme, scavengerprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040311-1
    See related
    Ensembl:ENSDARG00000009862 AllianceGenome:ZFIN:ZDB-GENE-040311-1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fa04d04; zgc:109723
    Summary
    Predicted to enable RNA 7-methylguanosine cap binding activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm. Predicted to be active in P-body and nucleus. Orthologous to human DCPS (decapping enzyme, scavenger). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
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    Genomic context

    See dcps in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (39283999..39293639)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (39362512..39372152)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene FAD-dependent oxidoreductase domain containing 1 Neighboring gene cryptochrome circadian regulator 5 Neighboring gene kirre like nephrin family adhesion molecule 3a Neighboring gene potassium inwardly rectifying channel subfamily J member 1b Neighboring gene somatolactin beta

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables 5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA] diphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA 7-methylguanosine cap binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in P-body IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    m7GpppX diphosphatase
    Names
    histidine triad protein member 5
    mRNA decapping enzyme
    NP_991151.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205588.3NP_991151.3  m7GpppX diphosphatase

      Status: VALIDATED

      Source sequence(s)
      CU633782, EH547457
      UniProtKB/TrEMBL
      A0A8M1PGD6, F1R776
      Related
      ENSDARP00000022189.4, ENSDART00000016464.5
      Conserved Domains (1) summary
      cl27009
      Location:40315
      DcpS; Scavenger mRNA decapping enzyme (DcpS) N-terminal

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      39283999..39293639
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)