hp1bp3 heterochromatin protein 1, binding protein 3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: hp1bp3provided by ZNC
Official Full Name: heterochromatin protein 1, binding protein 3provided by ZNC
Primary source: ZFIN:ZDB-GENE-060810-79
See related: Ensembl:ENSDARG00000044669 AllianceGenome:ZFIN:ZDB-GENE-060810-79
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb73a05; fb97a12; im:7157373; wu:fb73a05; wu:fb97a12
Summary: Predicted to enable DNA binding activity. Predicted to act upstream of or within nucleosome assembly. Predicted to be located in nucleus. Predicted to be part of nucleosome. Is expressed in telencephalon. Orthologous to human HP1BP3 (heterochromatin protein 1 binding protein 3). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 11

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	11	NC_007122.7 (37612312..37629293)
105	previous assembly	GRCz10 (GCF_000002035.5)	11	NC_007122.6 (37345107..37362088)

Chromosome 11 - NC_007122.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

fb73a05 (e-PCR)
- UniSTS:187429

fb25d03.y1 (e-PCR)
- UniSTS:190354

fb73a05.x1 (e-PCR)
- UniSTS:191135

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within nucleosome assembly	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of nucleosome	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: heterochromatin protein 1-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001199725.1 → NP_001186654.1 heterochromatin protein 1-binding protein 3

Status: VALIDATED

Source sequence(s)

CR847984

UniProtKB/TrEMBL

A0A8M1NV21, A0A8M2BGP7

Related

ENSDARP00000071963.4, ENSDART00000077496.6

Conserved Domains (1) summary

pfam00538
Location:136 → 210

Linker_histone; linker histone H1 and H5 family