U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zfand6 zinc finger, AN1-type domain 6 [ Danio rerio (zebrafish) ]

    Gene ID: 336461, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    zfand6provided by ZNC
    Official Full Name
    zinc finger, AN1-type domain 6provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8405
    See related
    Ensembl:ENSDARG00000098443 AllianceGenome:ZFIN:ZDB-GENE-030131-8405
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    AWP1; fb11b11; wu:fb11b11; zgc:101121
    Summary
    Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in protein targeting to peroxisome. Orthologous to human ZFAND6 (zinc finger AN1-type containing 6). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See zfand6 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (10562118..10583144)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (10320011..10341037)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496148 Neighboring gene 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) Neighboring gene uncharacterized LOC137496149 Neighboring gene fumarylacetoacetate hydrolase (fumarylacetoacetase) Neighboring gene uncharacterized LOC137496091 Neighboring gene cortexin domain containing 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Assignment of Functional Relevance to Genes at Type 2 Diabetes-Associated Loci Through Investigation of β-Cell Mass Deficits. O'Hare EA, et al. Mol Endocrinol, 2016 Apr. PMID 26963759, Free PMC Article
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    AN1-type zinc finger protein 6

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328569.1 → NP_001315498.1  AN1-type zinc finger protein 6 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CU695017, EH553618, EH571939
      UniProtKB/TrEMBL
      A0A8N7XJ83, Q6DGC3, Q6PH53
      Related
      ENSDARP00000156825.1, ENSDART00000193520.1
      Conserved Domains (2) summary
      smart00154
      Location:173 → 210
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:10 → 33
      zf-A20; A20-like zinc finger

    2. NM_001328570.1 → NP_001315499.1  AN1-type zinc finger protein 6 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CU695017, EH553618, EH571939
      UniProtKB/TrEMBL
      A0A2R8QU43, A0A8M1PA77
      Related
      ENSDARP00000157049.1, ENSDART00000185188.1

    3. NM_205760.2 → NP_991323.2  AN1-type zinc finger protein 6 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CU695017, EH553618, EH571939
      UniProtKB/TrEMBL
      A0A8N7XJ83, Q6DGC3, Q6PH53
      Related
      ENSDARP00000136708.1, ENSDART00000168801.3
      Conserved Domains (2) summary
      smart00154
      Location:173 → 210
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:10 → 33
      zf-A20; A20-like zinc finger

    RNA

    1. NR_137317.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CU695017, EH553618, EH571939

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      10562118..10583144
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools