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    carhsp1 calcium regulated heat stable protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 393534, updated on 4-Jan-2025

    Summary

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    Official Symbol
    carhsp1provided by ZNC
    Official Full Name
    calcium regulated heat stable protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1479
    See related
    Ensembl:ENSDARG00000053129 AllianceGenome:ZFIN:ZDB-GENE-040426-1479
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:65920; wu:fc04b03
    Summary
    Predicted to enable nucleic acid binding activity. Orthologous to human CARHSP1 (calcium regulated heat stable protein 1). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See carhsp1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (27798094..27831068)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (27667230..27700973)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene deoxyribonuclease I Neighboring gene N-alpha-acetyltransferase 60, NatF catalytic subunit Neighboring gene 4-aminobutyrate aminotransferase Neighboring gene methyltransferase 22, Kin17 lysine

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC65920

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    calcium-regulated heat-stable protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200562.2 → NP_956856.2  calcium-regulated heat-stable protein 1

      Status: VALIDATED

      Source sequence(s)
      CU464204, EH434688
      UniProtKB/TrEMBL
      A0A8M1PFD0

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      27798094..27831068
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009299441.4 → XP_009297716.1  calcium-regulated heat-stable protein 1 isoform X1

      See identical proteins and their annotated locations for XP_009297716.1

      UniProtKB/TrEMBL
      A0A8M3AY02, Q6PHF1
      Conserved Domains (1) summary
      cd04458
      Location:73 → 136
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

    2. XM_005163934.5 → XP_005163991.1  calcium-regulated heat-stable protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005163991.1

      UniProtKB/TrEMBL
      A0A8M3AY02, Q6PHF1
      Related
      ENSDARP00000125927.1, ENSDART00000151437.3
      Conserved Domains (1) summary
      cd04458
      Location:73 → 136
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
    Nucleotide Protein Strain
    Heading Accession and Version

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