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    si:dkey-229b18.3 si:dkey-229b18.3 [ Danio rerio (zebrafish) ]

    Gene ID: 558830, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkey-229b18.3provided by ZNC
    Official Full Name
    si:dkey-229b18.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6870
    See related
    Ensembl:ENSDARG00000095912 AllianceGenome:ZFIN:ZDB-GENE-030131-6870
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa09h07; wu:fa09h07; wu:fq17c05
    Summary
    Predicted to enable metal ion binding activity. Is expressed in brain; forebrain; hindbrain; and telencephalon. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-229b18.3 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (30490504..30503319, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (30679758..30692593, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene gap junction protein, alpha 5a Neighboring gene acid phosphatase 6, lysophosphatidic Neighboring gene E3 SUMO-protein ligase ZBED1 Neighboring gene chromatin assembly factor 1, subunit B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Zebrafish mosaic eyes is a novel FERM protein required for retinal lamination and retinal pigmented epithelial tight junction formation. Jensen AM, et al. Curr Biol, 2004 Apr 20. PMID 15084287
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC558830; uncharacterized protein si:dkey-229b18.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      30490504..30503319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_682097.8 → XP_687189.3  uncharacterized protein si:dkey-229b18.3

      UniProtKB/TrEMBL
      A0A8N7UUS4
      Related
      ENSDARP00000124369.1, ENSDART00000149483.3
      Conserved Domains (3) summary
      smart00225
      Location:162 → 252
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00017
      Location:979 → 999
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:151 → 252
      BTB; BTB/POZ domain
    Nucleotide Protein Strain
    Heading Accession and Version

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