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    hmgn7 high mobility group nucleosomal binding domain 7 [ Danio rerio (zebrafish) ]

    Gene ID: 567263, updated on 9-Dec-2024

    Summary

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    Official Symbol
    hmgn7provided by ZNC
    Official Full Name
    high mobility group nucleosomal binding domain 7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061215-23
    See related
    Ensembl:ENSDARG00000062326 AllianceGenome:ZFIN:ZDB-GENE-061215-23
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb74a08; wu:fb74a08; zgc:158409
    Summary
    Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to be located in chromatin. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See hmgn7 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (22969565..22972775)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (22465765..22468975)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene si:ch211-26b3.4 Neighboring gene apolipoprotein O-like Neighboring gene si:dkey-237j10.2 Neighboring gene bromodomain and WD repeat domain containing 3 Neighboring gene charged multivesicular body protein 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC158409

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables nucleosomal DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in chromatin IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    high mobility group nucleosomal binding domain 7
    Names
    nonhistone chromosomal protein HMG-14A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080033.2 → NP_001073502.1  high mobility group nucleosomal binding domain 7

      See identical proteins and their annotated locations for NP_001073502.1

      Status: VALIDATED

      Source sequence(s)
      BC128863, BI984515
      UniProtKB/TrEMBL
      A1A5Y7, A8E5A3
      Related
      ENSDARP00000084425.4, ENSDART00000089992.6
      Conserved Domains (1) summary
      pfam01101
      Location:1 → 80
      HMG14_17; HMG14 and HMG17

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      22969565..22972775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005165181.3 → XP_005165238.1  high mobility group nucleosomal binding domain 7 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BCE7, E9QI01
      Related
      ENSDARP00000113935.1, ENSDART00000145477.2
      Conserved Domains (1) summary
      pfam01101
      Location:2 → 92
      HMG14_17; HMG14 and HMG17

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394574.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      197367..200578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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