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    tmem209 transmembrane protein 209 [ Danio rerio (zebrafish) ]

    Gene ID: 555279, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tmem209provided by ZNC
    Official Full Name
    transmembrane protein 209provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2879
    See related
    Ensembl:ENSDARG00000039340 AllianceGenome:ZFIN:ZDB-GENE-030131-2879
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc20f10; fe36f06; im:6909884; wu:fc20f10; wu:fe36f06; si:ch211-240j22.1
    Summary
    Predicted to be active in membrane. Orthologous to human TMEM209 (transmembrane protein 209). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tmem209 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (5093720..5108947, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (5085150..5100377, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene striatin interacting protein 2 Neighboring gene adenosylhomocysteinase like 2b Neighboring gene cyclin D2, b Neighboring gene TP53 induced glycolysis regulatory phosphatase b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
    2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ14803

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 209

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001270973.1 → NP_001257902.1  transmembrane protein 209

      Status: VALIDATED

      Source sequence(s)
      CR751235, CU468915
      UniProtKB/TrEMBL
      A0A8M1NZT5, F6P528
      Related
      ENSDARP00000119854.2, ENSDART00000136096.4
      Conserved Domains (1) summary
      pfam09786
      Location:10 → 552
      CytochromB561_N; Cytochrome B561, N terminal

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      5093720..5108947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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