rnf113a ring finger protein 113A [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rnf113aprovided by ZNC
Official Full Name: ring finger protein 113Aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040825-1
See related: Ensembl:ENSDARG00000037930 AllianceGenome:ZFIN:ZDB-GENE-040825-1
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: znf183; wu:fj91a07; zgc:110007
Summary: Predicted to enable metal ion binding activity. Predicted to be involved in snoRNA splicing. Predicted to be part of U2-type spliceosomal complex. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 5. Orthologous to several human genes including RNF113A (ring finger protein 113A). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (31919042..31924589, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (31787328..31792875, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in snoRNA splicing	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of U2-type spliceosomal complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: E3 ubiquitin-protein ligase RNF113A

Names: zinc finger protein 183

NP_001004536.1

EC 2.3.2.27

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001004536.1 → NP_001004536.1 E3 ubiquitin-protein ligase RNF113A

See identical proteins and their annotated locations for NP_001004536.1

Status: PROVISIONAL

Source sequence(s)

AY648809

UniProtKB/TrEMBL

Q4VBU4, Q6DRF0

Related

ENSDARP00000110509.1, ENSDART00000122589.3

Conserved Domains (3) summary

COG5152
Location:23 → 309

COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

pfam00642
Location:185 → 211

zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

pfam13920
Location:249 → 289

zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)