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    kansl3 KAT8 regulatory NSL complex subunit 3 [ Danio rerio (zebrafish) ]

    Gene ID: 555951, updated on 9-Dec-2024

    Summary

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    Official Symbol
    kansl3provided by ZNC
    Official Full Name
    KAT8 regulatory NSL complex subunit 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050809-132
    See related
    Ensembl:ENSDARG00000029556 AllianceGenome:ZFIN:ZDB-GENE-050809-132
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb43d12; wu:fb43d12; zgc:109953
    Summary
    Predicted to be involved in positive regulation of transcription by RNA polymerase II and regulation of mitochondrial transcription. Predicted to act upstream of or within chromatin organization. Predicted to be located in mitochondrion. Predicted to be part of NSL complex. Orthologous to human KANSL3 (KAT8 regulatory NSL complex subunit 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See kansl3 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (51308328..51340784, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (51321799..51354258, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene dispatched RND transporter family member 3 Neighboring gene bone morphogenetic protein 1a Neighboring gene si:ch211-198o12.4 Neighboring gene charged multivesicular body protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC109953

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of mitochondrial transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of NSL complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of NSL complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    KAT8 regulatory NSL complex subunit 3
    Names
    NSL complex protein NSL3
    non-specific lethal 3 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034176.1 → NP_001029348.1  KAT8 regulatory NSL complex subunit 3

      See identical proteins and their annotated locations for NP_001029348.1

      Status: PROVISIONAL

      Source sequence(s)
      BC099996
      UniProtKB/Swiss-Prot
      Q499B3
      Related
      ENSDARP00000060632.4, ENSDART00000060633.6

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      51308328..51340784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009304313.4 → XP_009302588.1  KAT8 regulatory NSL complex subunit 3 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AVL6

    2. XM_068222965.1 → XP_068079066.1  KAT8 regulatory NSL complex subunit 3 isoform X4

    3. XM_005167344.5 → XP_005167401.1  KAT8 regulatory NSL complex subunit 3 isoform X3

      UniProtKB/TrEMBL
      A0A286Y8J5, A0A8M2BES8
      Related
      ENSDARP00000143467.2, ENSDART00000178209.2

    4. XM_005167343.5 → XP_005167400.1  KAT8 regulatory NSL complex subunit 3 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BEQ8
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q499B3.1 GenPept UniProtKB/Swiss-Prot:Q499B3

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