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    ifi44f4 interferon induced protein 44f4 [ Danio rerio (zebrafish) ]

    Gene ID: 571377, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ifi44f4provided by ZNC
    Official Full Name
    interferon induced protein 44f4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4763
    See related
    Ensembl:ENSDARG00000071355 AllianceGenome:ZFIN:ZDB-GENE-030131-4763
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd59c04; wu:fd59c04; si:ch211-197g15.7
    Summary
    Predicted to enable GTP binding activity. Predicted to be involved in immune response. Orthologous to human IFI44 (interferon induced protein 44). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ifi44f4 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (17476287..17482284, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (17451309..17457300, complement)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene si:ch211-197g15.9 Neighboring gene interferon induced protein 44f3 Neighboring gene interferon-induced protein 44f5 Neighboring gene si:ch211-197g15.5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. IFN-Stimulated Genes in Zebrafish and Humans Define an Ancient Arsenal of Antiviral Immunity. Levraud JP, et al. J Immunol, 2019 Dec 15. PMID 31732531
    2. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC571377

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386825.1 → NP_001373754.1  uncharacterized protein LOC571377 isoform 1

      Status: VALIDATED

      Source sequence(s)
      BX649327
      UniProtKB/TrEMBL
      A0A8M3AN49
      Related
      ENSDARP00000096226.4, ENSDART00000105453.5
      Conserved Domains (2) summary
      cd00882
      Location:217 → 404
      Ras_like_GTPase; Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)
      cl02144
      Location:39 → 156
      TLD

    2. NM_001386826.1 → NP_001373755.1  uncharacterized protein LOC571377 isoform 2

      Status: VALIDATED

      Source sequence(s)
      BX649327
      UniProtKB/TrEMBL
      A0A0R4IAS8, A0A8M6Z477
      Related
      ENSDARP00000131729.2, ENSDART00000171293.2
      Conserved Domains (1) summary
      cd00882
      Location:22 → 209
      Ras_like_GTPase; Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      17476287..17482284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068216364.1 → XP_068072465.1  uncharacterized protein LOC571377 isoform X2

      UniProtKB/TrEMBL
      A0A0R4IAS8, A0A8M6Z477

    2. XM_068216363.1 → XP_068072464.1  uncharacterized protein LOC571377 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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