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    zc2hc1a zinc finger, C2HC-type containing 1A [ Danio rerio (zebrafish) ]

    Gene ID: 324412, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zc2hc1aprovided by ZNC
    Official Full Name
    zinc finger, C2HC-type containing 1Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3132
    See related
    Ensembl:ENSDARG00000027915 AllianceGenome:ZFIN:ZDB-GENE-030131-3132
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fam164a; fc28a05; zgc:63810; wu:fc28a05
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human ZC2HC1A (zinc finger C2HC-type containing 1A). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See zc2hc1a in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (22740497..22756538, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (22595323..22611383, complement)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene catenin (cadherin-associated protein), delta 2a Neighboring gene si:dkey-40h20.1 Neighboring gene uncharacterized LOC137489239 Neighboring gene si:dkey-7n6.2 Neighboring gene uncharacterized LOC137489240

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Transcriptome analysis reveals positive selection on the divergent between topmouth culter and zebrafish. Ren L, et al. Gene, 2014 Dec 1. PMID 25267534
    2. Function-driven discovery of disease genes in zebrafish using an integrated genomics big data resource. Shim H, et al. Nucleic Acids Res, 2016 Nov 16. PMID 27903883, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger C2HC domain-containing protein 1A
    Names
    family with sequence similarity 164, member A
    protein FAM164A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199680.1 → NP_955974.1  zinc finger C2HC domain-containing protein 1A

      See identical proteins and their annotated locations for NP_955974.1

      Status: PROVISIONAL

      Source sequence(s)
      BC055250
      UniProtKB/Swiss-Prot
      Q7SXT7
      Related
      ENSDARP00000034439.6, ENSDART00000035409.8
      Conserved Domains (1) summary
      pfam13913
      Location:13 → 37
      zf-C2HC_2; zinc-finger of a C2HC-type

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      22740497..22756538 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005162676.5 → XP_005162733.1  zinc finger C2HC domain-containing protein 1A isoform X1

      UniProtKB/TrEMBL
      A0A8M2B9Q9
      Related
      ENSDARP00000121329.1, ENSDART00000146247.2
      Conserved Domains (1) summary
      pfam13913
      Location:13 → 37
      zf-C2HC_2; zinc-finger of a C2HC-type

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395174.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      168951..185056 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7SXT7.1 GenPept UniProtKB/Swiss-Prot:Q7SXT7

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