eif3d eukaryotic translation initiation factor 3, subunit D [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: eif3dprovided by ZNC
Official Full Name: eukaryotic translation initiation factor 3, subunit Dprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-8442
See related: Ensembl:ENSDARG00000021257 AllianceGenome:ZFIN:ZDB-GENE-030131-8442
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: eif3s7; zgc:64097; wu:fb12a03
Summary: Predicted to enable mRNA cap binding activity and translation initiation factor activity. Predicted to be involved in cap-dependent translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to human EIF3D (eukaryotic translation initiation factor 3 subunit D). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (29640996..29654923)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (29510154..29524081)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

AI384244 (e-PCR)
- UniSTS:206736

fb52d05.x1 (e-PCR)
- UniSTS:190667

fj25c09.y1 (e-PCR)
- UniSTS:198882

fa94g08.x1 (e-PCR)
- UniSTS:189693

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables RNA binding	ISS Inferred from Sequence or Structural Similarity more info
enables mRNA cap binding	ISS Inferred from Sequence or Structural Similarity more info
enables translation initiation factor activity	IBA Inferred from Biological aspect of Ancestor more info
enables translation initiation factor activity	IEA Inferred from Electronic Annotation more info
contributes_to translation initiation factor activity	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
involved_in cap-dependent translational initiation	ISS Inferred from Sequence or Structural Similarity more info
involved_in formation of cytoplasmic translation initiation complex	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within translation	IEA Inferred from Electronic Annotation more info
involved_in translational initiation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within translational initiation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
part_of eukaryotic 43S preinitiation complex	IEA Inferred from Electronic Annotation more info
part_of eukaryotic 48S preinitiation complex	IEA Inferred from Electronic Annotation more info
part_of eukaryotic translation initiation factor 3 complex	IBA Inferred from Biological aspect of Ancestor more info
part_of eukaryotic translation initiation factor 3 complex	IEA Inferred from Electronic Annotation more info
part_of eukaryotic translation initiation factor 3 complex	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: eukaryotic translation initiation factor 3 subunit D

Names: eukaryotic translation initiation factor 3, subunit 7 zeta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200016.1 → NP_956310.1 eukaryotic translation initiation factor 3 subunit D

See identical proteins and their annotated locations for NP_956310.1

Status: PROVISIONAL

Source sequence(s)

BC053250

UniProtKB/Swiss-Prot

A2BHH8, Q6TH15, Q7T353

Related

ENSDARP00000011011.6, ENSDART00000011052.9

Conserved Domains (1) summary

pfam05091
Location:4 → 524

eIF-3_zeta; Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)