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    snn stannin [ Danio rerio (zebrafish) ]

    Gene ID: 406319, updated on 9-Dec-2024

    Summary

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    Official Symbol
    snnprovided by ZNC
    Official Full Name
    stanninprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1987
    See related
    Ensembl:ENSDARG00000099888 AllianceGenome:ZFIN:ZDB-GENE-040426-1987
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj47f06; zgc:73221; wu:fj47f06
    Summary
    Predicted to be located in mitochondrial outer membrane. Predicted to be active in membrane. Orthologous to human SNN (stannin). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See snn in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (43813518..43821381, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (43112601..43120464, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene phospholipase A2 group X Neighboring gene zinc finger CCCH-type containing 7A Neighboring gene lipopolysaccharide-induced TNF factor Neighboring gene RecQ mediated genome instability 2 Neighboring gene mesothelin a Neighboring gene uncharacterized LOC137490197

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    stannin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213046.2 → NP_998211.1  stannin

      See identical proteins and their annotated locations for NP_998211.1

      Status: VALIDATED

      Source sequence(s)
      BX324229
      UniProtKB/TrEMBL
      A0A8M1PG69, Q6P957
      Related
      ENSDARP00000138499.1, ENSDART00000166021.2
      Conserved Domains (3) summary
      pfam09051
      Location:61 → 86
      SNN_cytoplasm; Stannin cytoplasmic
      pfam09049
      Location:2 → 33
      SNN_transmemb; Stannin transmembrane
      pfam09050
      Location:34 → 59
      SNN_linker; Stannin unstructured linker

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      43813518..43821381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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