crp3 C-reactive protein 3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: crp3provided by ZNC
Official Full Name: C-reactive protein 3provided by ZNC
Primary source: ZFIN:ZDB-GENE-060503-220
See related: Ensembl:ENSDARG00000042613 AllianceGenome:ZFIN:ZDB-GENE-060503-220
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-234p6.12
Summary: Predicted to enable metal ion binding activity. Acts upstream of or within defense response to virus. Predicted to be located in extracellular region. Is expressed in digestive system; fin; gill; immune system; and muscle. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

Location:: chromosome: 24

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	24	NC_007135.7 (38092607..38097305, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	24	NC_007135.6 (38204708..38209408, complement)

Chromosome 24 - NC_007135.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within defense response to virus	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: C-reactive protein 3

Names: PTX3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001114915.2 → NP_001108387.1 C-reactive protein 3 precursor

See identical proteins and their annotated locations for NP_001108387.1

Status: PROVISIONAL

Source sequence(s)

BC154042

UniProtKB/TrEMBL

A0A8M6YW60, A3KPG5, A8KBB1, F6P334

Related

ENSDARP00000104927.3, ENSDART00000124321.3

Conserved Domains (1) summary

cl22861
Location:17 → 220

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...