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    lrrc71 leucine rich repeat containing 71 [ Danio rerio (zebrafish) ]

    Gene ID: 558774, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lrrc71provided by ZNC
    Official Full Name
    leucine rich repeat containing 71provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-892
    See related
    Ensembl:ENSDARG00000036412 AllianceGenome:ZFIN:ZDB-GENE-060503-892
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-81a5.5
    Summary
    Orthologous to human LRRC71 (leucine rich repeat containing 71). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See lrrc71 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (9091656..9107063)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (9172747..9188325)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene ring finger protein 115b Neighboring gene ash1 (absent, small, or homeotic)-like (Drosophila) Neighboring gene SET domain bifurcated histone lysine methyltransferase 1a Neighboring gene CDC-like kinase 2a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 71
    Names
    leucine-rich repeat-containing protein 71-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044874.2 → NP_001038339.1  leucine-rich repeat-containing protein 71

      See identical proteins and their annotated locations for NP_001038339.1

      Status: PROVISIONAL

      Source sequence(s)
      BC134854
      UniProtKB/TrEMBL
      A4IFZ6, Q1L8U9
      Related
      ENSDARP00000052897.7, ENSDART00000052898.9
      Conserved Domains (2) summary
      cd00116
      Location:71 → 251
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:116 → 136
      LRR_RI; leucine-rich repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      9091656..9107063
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009294045.4 → XP_009292320.1  leucine-rich repeat-containing protein 71 isoform X1

      UniProtKB/TrEMBL
      A0A8M3AVD0
      Conserved Domains (2) summary
      cd00116
      Location:71 → 251
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:116 → 136
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_005159435.4 → XP_005159492.1  leucine-rich repeat-containing protein 71 isoform X2

      UniProtKB/TrEMBL
      A0A8M2B5Z2
      Conserved Domains (2) summary
      cd00116
      Location:71 → 251
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:116 → 136
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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