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    si:ch1073-287p18.1 si:ch1073-287p18.1 [ Danio rerio (zebrafish) ]

    Gene ID: 556730, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch1073-287p18.1provided by ZNC
    Official Full Name
    si:ch1073-287p18.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081104-80
    See related
    Ensembl:ENSDARG00000075765 AllianceGenome:ZFIN:ZDB-GENE-081104-80
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human C8orf82 (chromosome 8 open reading frame 82). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See si:ch1073-287p18.1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (52332759..52338810, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (52520258..52526925, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene rhophilin, Rho GTPase binding protein 1 Neighboring gene nicotinate phosphoribosyltransferase Neighboring gene collagen alpha-3(IV) chain-like Neighboring gene Rho GTPase activating protein 39 Neighboring gene GDP-L-fucose synthase, tandem duplicate 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    UPF0598 protein C8orf82 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001144787.1 → NP_001138259.1  UPF0598 protein C8orf82 homolog isoform 2

      Status: PROVISIONAL

      Source sequence(s)
      CU633982
      UniProtKB/TrEMBL
      A0A8M1NT22, B8JMG5
      Related
      ENSDARP00000117975.1, ENSDART00000132941.2
      Conserved Domains (1) summary
      pfam14956
      Location:21 → 60
      DUF4505; Domain of unknown function (DUF4505)

    2. NM_001430832.1 → NP_001417761.1  UPF0598 protein C8orf82 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      CU633982
      UniProtKB/TrEMBL
      A0A8M3ALU3, B8JMG6
      Related
      ENSDARP00000100113.3, ENSDART00000109735.4

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      52332759..52338810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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