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    rrp1 ribosomal RNA processing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 321059, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rrp1provided by ZNC
    Official Full Name
    ribosomal RNA processing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-9837
    See related
    Ensembl:ENSDARG00000103337 AllianceGenome:ZFIN:ZDB-GENE-030131-9837
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb43; nnp1; Nop52; sb:cb43; wu:fb37f12; wu:fi05d01
    Summary
    Predicted to act upstream of or within rRNA processing. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; immature eye; midbrain; musculature system; and visual system. Orthologous to several human genes including RRP1B (ribosomal RNA processing 1B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rrp1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (145054..153342)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (188634..196590)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103911589 Neighboring gene uncharacterized LOC103911597 Neighboring gene claudin 10b Neighboring gene claudin 10-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of 315 genes essential for early zebrafish development. Amsterdam A, et al. Proc Natl Acad Sci U S A, 2004 Aug 31. PMID 15256591, Free PMC Article
    2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of preribosome, small subunit precursor IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal RNA processing protein 1 homolog B; ribosomal RNA processing protein 1 homolog A
    Names
    novel nuclear protein 1
    ribosomal RNA processing 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      145054..153342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478780.2 → XP_021334455.2  ribosomal RNA processing protein 1 homolog A isoform X1

      UniProtKB/TrEMBL
      A0A8M9QJV2

    2. XM_068223520.1 → XP_068079621.1  ribosomal RNA processing protein 1 homolog A isoform X2

      UniProtKB/TrEMBL
      A0A8M9QJV2
      Related
      ENSDARP00000139145.2, ENSDART00000162764.2
    Nucleotide Protein Strain
    Heading Accession and Version

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