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    LOC100005423 uncharacterized LOC100005423 [ Danio rerio (zebrafish) ]

    Gene ID: 100005423, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC100005423
    Gene description
    uncharacterized LOC100005423
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC100005423 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (20859069..20862447, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (20827649..20830389, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100535624 Neighboring gene deoxyhypusine hydroxylase/monooxygenase Neighboring gene fizzy/cell division cycle 20 related 1a Neighboring gene si:ch73-196i15.3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC100005423

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      20859069..20862447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478409.2 → XP_021334084.1  uncharacterized protein LOC100005423

      UniProtKB/TrEMBL
      A0A8M1PSV9
      Conserved Domains (1) summary
      cl21562
      Location:212 → 375
      DDE_Tnp_4; DDE superfamily endonuclease

    RNA

    1. XR_011016577.1 RNA Sequence

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394719.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      380967..384345 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001344450.8 → XP_001344486.2  uncharacterized protein LOC100005423

      UniProtKB/TrEMBL
      A0A8M1PSV9
      Conserved Domains (1) summary
      cl21562
      Location:212 → 375
      DDE_Tnp_4; DDE superfamily endonuclease

    RNA

    1. XR_011009702.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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