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    supt3h SPT3 homolog, SAGA and STAGA complex component [ Danio rerio (zebrafish) ]

    Gene ID: 436898, updated on 4-Jan-2025

    Summary

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    Official Symbol
    supt3hprovided by ZNC
    Official Full Name
    SPT3 homolog, SAGA and STAGA complex componentprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040718-370
    See related
    Ensembl:ENSDARG00000098141 AllianceGenome:ZFIN:ZDB-GENE-040718-370
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:92246
    Summary
    Predicted to enable transcription coactivator activity. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human SUPT3H (SPT3 homolog, SAGA and STAGA complex component). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See supt3h in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (5161755..5426251, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (5003829..5267079, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene kelch-like protein 29 Neighboring gene CDC5 cell division cycle 5-like (S. pombe) Neighboring gene uncharacterized LOC137488063 Neighboring gene RUNX family transcription factor 2a Neighboring gene chloride intracellular channel 5a Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription coactivator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transcription initiation protein SPT3 homolog
    Names
    suppressor of Ty 3 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002625.1 → NP_001002625.1  transcription initiation protein SPT3 homolog

      See identical proteins and their annotated locations for NP_001002625.1

      Status: PROVISIONAL

      Source sequence(s)
      BC075959
      UniProtKB/TrEMBL
      A0A8M1N109, Q6DHL1
      Related
      ENSDARP00000150750.1, ENSDART00000188102.1
      Conserved Domains (1) summary
      cl02174
      Location:23 → 114
      TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      5161755..5426251 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021467143.2 → XP_021322818.1  transcription initiation protein SPT3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A0R4IR35, A0A8M9P8V4
      Related
      ENSDARP00000139016.2, ENSDART00000157937.2
      Conserved Domains (1) summary
      cl02174
      Location:32 → 123
      TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    Nucleotide Protein Strain
    Heading Accession and Version

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