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    ap3s1 adaptor related protein complex 3 subunit sigma 1 [ Danio rerio (zebrafish) ]

    Gene ID: 449791, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ap3s1provided by ZNC
    Official Full Name
    adaptor related protein complex 3 subunit sigma 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041010-38
    See related
    AllianceGenome:ZFIN:ZDB-GENE-041010-38
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fa92f10; zgc:101869
    Summary
    Predicted to act upstream of or within Golgi to vacuole transport and intracellular protein transport. Predicted to be located in cytoplasmic vesicle membrane. Predicted to be part of AP-3 adaptor complex. Orthologous to human AP3S1 (adaptor related protein complex 3 subunit sigma 1). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    all
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    Genomic context

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    See ap3s1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_008805351.2 (1..2208, complement)
    RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_008805440.1 (1133..1685, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_008805351.1 (1..2208, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_008805440.1 (1133..1685, complement)

    NW_008805440.1Genomic Context describing neighboring genes

    NW_008805351.2Genomic Context describing neighboring genes Neighboring gene cysteine dioxygenase, type I

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Genetic characterization and in vivo image analysis of novel zebrafish Danio rerio pigment mutants. Hsu CC, et al. J Fish Biol, 2013 May. PMID 23639161
    2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within Golgi to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of AP-3 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasmic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in intracellular membrane-bounded organelle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    AP-3 complex subunit sigma-1
    Names
    adaptor-related protein complex 3, sigma 1 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005964.1 → NP_001005964.1  AP-3 complex subunit sigma-1

      See identical proteins and their annotated locations for NP_001005964.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083303
      UniProtKB/TrEMBL
      Q5XJJ8
      Conserved Domains (1) summary
      COG5030
      Location:1 → 152
      APS2; Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NW_008805351.2 Reference GRCz11 Primary Assembly

      Range
      1..2208 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 Primary Assembly

    Genomic

    1. NW_008805440.1 Reference GRCz11 Primary Assembly

      Range
      1133..1685 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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