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    jpt1b Jupiter microtubule associated homolog 1b [ Danio rerio (zebrafish) ]

    Gene ID: 402906, updated on 9-Dec-2024

    Summary

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    Official Symbol
    jpt1bprovided by ZNC
    Official Full Name
    Jupiter microtubule associated homolog 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2784
    See related
    Ensembl:ENSDARG00000099312 AllianceGenome:ZFIN:ZDB-GENE-030131-2784
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    HN1; hn1b; zgc:73237; wu:fc17g11
    Summary
    Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human JPT1 (Jupiter microtubule associated homolog 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See jpt1b in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (6380150..6417286, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (6494037..6531204, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene zgc:136767 Neighboring gene uncharacterized LOC137490399 Neighboring gene zinc-binding protein A33 Neighboring gene small ubiquitin like modifier 2b Neighboring gene nucleoporin 85

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Cloning, expression and subcellular localization of HN1 and HN1L genes, as well as characterization of their orthologs, defining an evolutionarily conserved gene family. Zhou G, et al. Gene, 2004 Apr 28. PMID 15094197
    2. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    jupiter microtubule associated homolog 1b
    Names
    hematological and neurological expressed 1
    hematological and neurological expressed 1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205613.1 → NP_991176.1  jupiter microtubule associated homolog 1b

      See identical proteins and their annotated locations for NP_991176.1

      Status: PROVISIONAL

      Source sequence(s)
      AY398359
      UniProtKB/TrEMBL
      Q4QRM1, Q6TGZ7
      Related
      ENSDARP00000130889.1, ENSDART00000160979.2
      Conserved Domains (1) summary
      pfam17054
      Location:14 → 97
      JUPITER; Microtubule-Associated protein Jupiter

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      6380150..6417286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005163709.5 → XP_005163766.1  jupiter microtubule associated homolog 1b isoform X1

      UniProtKB/TrEMBL
      A0A8M2BAY7
      Conserved Domains (1) summary
      pfam17054
      Location:14 → 97
      JUPITER; Microtubule-Associated protein Jupiter
    Nucleotide Protein Strain
    Heading Accession and Version

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