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    slc43a1a solute carrier family 43 member 1a [ Danio rerio (zebrafish) ]

    Gene ID: 334395, updated on 9-Dec-2024

    Summary

    Official Symbol
    slc43a1aprovided by ZNC
    Official Full Name
    solute carrier family 43 member 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6327
    See related
    Ensembl:ENSDARG00000037393 AllianceGenome:ZFIN:ZDB-GENE-030131-6327
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    lat3a; fi47a12; slc43a1; zgc:55850; wu:fi47a12
    Summary
    Predicted to enable L-amino acid transmembrane transporter activity and neutral L-amino acid transmembrane transporter activity. Acts upstream of or within podocyte development. Predicted to be located in plasma membrane. Is expressed in several structures, including Kupffer's vesicle; axis; digestive system; intermediate cell mass of mesoderm; and interrenal primordium. Orthologous to human SLC43A1 (solute carrier family 43 member 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See slc43a1a in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (22076596..22098011)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (21779351..21800766)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene structure specific recognition protein 1a Neighboring gene cardiotrophin-like cytokine factor 1 Neighboring gene si:dkey-6i22.5 Neighboring gene mediator complex subunit 19a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane  
    located_in plasma membrane  

    General protein information

    Preferred Names
    solute carrier family 43 member 1a
    Names
    solute carrier family 43 (amino acid system L transporter), member 1a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001327986.1 → NP_001314915.1  solute carrier family 43 member 1a

      Status: VALIDATED

      Source sequence(s)
      CU062437
      UniProtKB/TrEMBL
      A0A8M1P9P9, F2Z4V7
      Related
      ENSDARP00000096925.4, ENSDART00000106147.6
      Conserved Domains (2) summary
      cd06174
      Location:77 → 220
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:77 → 460
      MFS_1; Major Facilitator Superfamily

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      22076596..22098011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394904.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      258615..280030
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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