U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    EYE conserved oligomeric Golgi complex component-related / COG complex component-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835217, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EYE
    Official Full Name
    conserved oligomeric Golgi complex component-related / COG complex component-like protein
    Primary source
    TAIR:AT5G51430
    Locus tag
    AT5G51430
    See related
    Araport:AT5G51430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO YELLOW; MFG13.14; MFG13_14
    Summary
    Encodes a protein that is homologous to Cog7, a subunit of the conserved oligomeric Golgi (COG) complex, which is required for the normal morphology and function of the Golgi apparatus. It is likely to be involved in transport or retention of Golgi-localized proteins and in maintenance of Golgi morphology.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EYE in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (20886745..20891007, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene LUC7 N terminus domain-containing protein Neighboring gene miscRNA Neighboring gene long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene RPM1 interacting protein 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. EMBRYO YELLOW gene, encoding a subunit of the conserved oligomeric Golgi complex, is required for appropriate cell expansion and meristem organization in Arabidopsis thaliana. Ishikawa T, et al. Genes Cells, 2008 Jun. PMID 18422605
    2. Arabidopsis COG Complex Subunits COG3 and COG8 Modulate Golgi Morphology, Vesicle Trafficking Homeostasis and Are Essential for Pollen Tube Growth. Tan X, et al. PLoS Genet, 2016 Jul. PMID 27448097, Free PMC Article
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The plant COG complex, which includes the EYE protein, might control the proper formation of the extracellular matrix, which is needed for correct intercellular interactions and the organization of the SAM that is essential for organ development. [EYE]
      Title: EMBRYO YELLOW gene, encoding a subunit of the conserved oligomeric Golgi complex, is required for appropriate cell expansion and meristem organization in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_124522.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within Golgi organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within meristem development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within meristem structural organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein retention in Golgi apparatus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within shoot system morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within unidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of Golgi transport complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    conserved oligomeric Golgi complex component-related / COG complex component-like protein
    NP_199956.1
    • EMBRYO YELLOW (EYE); CONTAINS InterPro DOMAIN/s: Conserved oligomeric Golgi complex, subunit 7 (InterPro:IPR019335); Has 231 Blast hits to 215 proteins in 93 species: Archae - 2; Bacteria - 0; Metazoa - 129; Fungi - 18; Plants - 50; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20886745..20891007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124522.4 → NP_199956.1  conserved oligomeric Golgi complex component-related / COG complex component-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199956.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A097PSW2, B1Q4S9, Q0WQF0, Q9FGN0
      UniProtKB/TrEMBL
      A0A178UMB5, A0A5S9YD61
      Conserved Domains (1) summary
      pfam10191
      Location:4 → 832
      COG7; Golgi complex component 7 (COG7)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FGN0.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools