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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819101, updated on 18-Sep-2024

    Summary

    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT2G44920
    Locus tag
    AT2G44920
    See related
    Araport:AT2G44920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T13E15.7
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    Genomic context

    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (18524311..18526827)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein 4 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene transmembrane protein, putative (DUF247)

    Bibliography

    General protein information

    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_566030.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Pentapeptide repeat-containing protein (TAIR:AT1G12250.1); Has 15593 Blast hits to 6460 proteins in 916 species: Archae - 263; Bacteria - 11679; Metazoa - 260; Fungi - 2; Plants - 261; Viruses - 44; Other Eukaryotes - 3084 (source: NCBI BLink).
    NP_566031.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (TAIR:AT5G55000.1); Has 14558 Blast hits to 5841 proteins in 857 species: Archae - 260; Bacteria - 11175; Metazoa - 170; Fungi - 0; Plants - 186; Viruses - 55; Other Eukaryotes - 2712 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18524311..18526827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130056.6NP_566030.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566030.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22160, Q53YH9, Q949R8
      UniProtKB/TrEMBL
      A0A178VSS7, A0A5S9X7S7, B9DFY4
      Conserved Domains (1) summary
      COG1357
      Location:94196
      YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]
    2. NM_130057.4NP_566031.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566031.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DFY4
      Conserved Domains (2) summary
      pfam00805
      Location:136175
      Pentapeptide; Pentapeptide repeats (8 copies)
      pfam13599
      Location:97172
      Pentapeptide_4; Pentapeptide repeats (9 copies)