U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SRO1 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818116, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SRO1
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT2G35510
    Locus tag
    AT2G35510
    See related
    Araport:AT2G35510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    similar to RCD one 1; T32F12.11; T32F12_11
    Summary
    Encodes a WWE domain-containing protein with 76% similarity to RCD1. The protein also contains a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SRO1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (14916690..14920482, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Plastid-lipid associated protein PAP / fibrillin family protein Neighboring gene shikimate kinase like 2 Neighboring gene Defender against death (DAD family) protein Neighboring gene basic region/leucine zipper transcription factor 16 Neighboring gene DNAJ heat shock N-terminal domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. RCD1 and SRO1 are necessary to maintain meristematic fate in Arabidopsis thaliana. Teotia S, et al. J Exp Bot, 2011 Jan. PMID 21172813, Free PMC Article
    2. The paralogous genes RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 have partially redundant functions during Arabidopsis development. Teotia S, et al. Plant Physiol, 2009 Sep. PMID 19625634, Free PMC Article
    3. Arabidopsis SIMILAR TO RCD-ONE genes are ubiquitous and respond to multiple abiotic stresses through diverse signaling pathways. Zhao X, et al. J Biosci, 2019 Dec. PMID 31894110
    4. Maize similar to RCD1 gene induced by salt enhances Arabidopsis thaliana abiotic stress resistance. Li X, et al. Biochem Biophys Res Commun, 2018 Sep 18. PMID 30097269
    5. Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors. Jaspers P, et al. Plant J, 2009 Oct. PMID 19548978

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SRO1 has partially overlapping functions with RCD1 in plant response to HgCl2 and H2O2 stress. Analysis of the transcriptional expression of SROs indicated that both of the RCD1 and SRO1 transcripts were up-regulated by HgCl2 and light, not by other stresses, and that of SRO5 was induced by salt
      Title: Arabidopsis SIMILAR TO RCD-ONE genes are ubiquitous and respond to multiple abiotic stresses through diverse signaling pathways.
    2. The maize SRO1b protein is encoded by 595 amino acid residues and shared conserved protein structures with Arabidopsis RCD1 and SRO1 proteins.
      Title: Maize similar to RCD1 gene induced by salt enhances Arabidopsis thaliana abiotic stress resistance.
    3. RCD1 and SRO1 are also necessary for proper cell differentiation.
      Title: RCD1 and SRO1 are necessary to maintain meristematic fate in Arabidopsis thaliana.
    4. RCD1 and SRO1 are required for the proper development of Arabidopsis in an unequally redundant manner.
      Title: Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors.
    5. This study shows that RCD1 and SRO1 are at least partially redundant and that they are essential genes for plant development.
      Title: The paralogous genes RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 have partially redundant functions during Arabidopsis development.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001336557.1
    NM_001336558.1
    NM_129103.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables NAD+-protein poly-ADP-ribosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within lateral root morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to oxidative stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    NP_001323747.1
    • similar to RCD one 1
    NP_001323748.1
    • similar to RCD one 1
    NP_565806.1
    • similar to RCD one 1 (SRO1); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: WWE protein-protein interaction domain protein family (TAIR:AT1G32230.3); Has 207 Blast hits to 202 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14916690..14920482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129103.5 → NP_565806.1  uncharacterized protein AT2G35510 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565806.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82289, Q940B2
      UniProtKB/TrEMBL
      A0A5S9X4F1, A0A654EZ39, A0A7G2EFL6
      Conserved Domains (2) summary
      pfam00644
      Location:316 → 400
      PARP; Poly(ADP-ribose) polymerase catalytic domain
      pfam12174
      Location:504 → 565
      RST; RCD1-SRO-TAF4 (RST) plant domain

    2. NM_001336557.1 → NP_001323748.1  uncharacterized protein AT2G35510 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY19, Q8H0Z1
      Conserved Domains (1) summary
      pfam00644
      Location:316 → 400
      PARP; Poly(ADP-ribose) polymerase catalytic domain

    3. NM_001336558.1 → NP_001323747.1  uncharacterized protein AT2G35510 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82289, Q940B2
      UniProtKB/TrEMBL
      A0A5S9X4F1, A0A654EZ39, A0A7G2EFL6
      Conserved Domains (2) summary
      pfam00644
      Location:316 → 400
      PARP; Poly(ADP-ribose) polymerase catalytic domain
      pfam12174
      Location:504 → 565
      RST; RCD1-SRO-TAF4 (RST) plant domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82289.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools