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    60S acidic ribosomal protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817317, updated on 18-Sep-2024

    Summary

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    Official Full Name
    60S acidic ribosomal protein family
    Primary source
    TAIR:AT2G27710
    Locus tag
    AT2G27710
    See related
    Araport:AT2G27710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15K20.19; F15K20_19
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (11816634..11817972)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene eukaryotic translation initiation factor 2 family protein / eIF-2 family protein Neighboring gene 60S acidic ribosomal protein family Neighboring gene copper ion binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis. Sinapidou E, et al. Plant J, 2004 Jun. PMID 15165183
    2. Proteome analysis of cold stress response in Arabidopsis thaliana using DIGE-technology. Amme S, et al. J Exp Bot, 2006. PMID 16574749
    3. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    4. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    5. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RPP2A and RPP2B cooperate to specify Cala2 resistance by providing recognition or signalling functions lacked by either partner protein.
      Title: Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202692.1
    NM_128330.4
    NM_179775.2
    NM_201820.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in chloroplast HDA PubMed 
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosolic ribosome HDA PubMed 
    located_in nucleolus HDA PubMed 
    located_in peroxisome HDA PubMed 
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    60S acidic ribosomal protein family
    NP_001189621.1
    • 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27720.1).
    NP_180339.1
    • 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27720.1); Has 1875 Blast hits to 1874 proteins in 360 species: Archae - 31; Bacteria - 1; Metazoa - 679; Fungi - 442; Plants - 437; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
    NP_850106.1
    • 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27720.1); Has 1875 Blast hits to 1874 proteins in 360 species: Archae - 31; Bacteria - 1; Metazoa - 679; Fungi - 442; Plants - 437; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
    NP_973549.1
    • 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11816634..11817972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128330.4 → NP_180339.1  60S acidic ribosomal protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180339.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LB03, Q9SLF7
      UniProtKB/TrEMBL
      A0A178VWL7, B9DGN3
      Conserved Domains (1) summary
      cd05833
      Location:1 → 62
      Ribosomal_P2; Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins ...

    2. NM_001202692.1 → NP_001189621.1  60S acidic ribosomal protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189621.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0Z3G4, F4IGR3
      Conserved Domains (1) summary
      cl21508
      Location:1 → 70
      Ribosomal_P1_P2_L12p; Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 ...

    3. NM_179775.2 → NP_850106.1  60S acidic ribosomal protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850106.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LB03, Q9SLF7
      UniProtKB/TrEMBL
      A0A178VWL7, B9DGN3
      Conserved Domains (1) summary
      cd05833
      Location:1 → 62
      Ribosomal_P2; Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins ...

    4. NM_201820.1 → NP_973549.1  60S acidic ribosomal protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973549.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LB03, Q9SLF7
      UniProtKB/TrEMBL
      A0A178VWL7, B9DGN3
      Conserved Domains (1) summary
      cd05833
      Location:1 → 62
      Ribosomal_P2; Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SLF7.1

    Gene LinkOut

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