U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    GGPS4 geranylgeranyl pyrophosphate synthase 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816379, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    GGPS4
    Official Full Name
    geranylgeranyl pyrophosphate synthase 4
    Primary source
    TAIR:AT2G18640
    Locus tag
    AT2G18640
    See related
    Araport:AT2G18640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24H14.2; geranylgeranyl pyrophosphate synthase 4
    Summary
    Encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See GGPS4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (8083518..8084960, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Terpenoid synthases superfamily protein Neighboring gene transmembrane protein, putative (DUF677) Neighboring gene RING/U-box superfamily protein Neighboring gene plant natriuretic peptide A

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cloning and functional expression of a novel geranylgeranyl pyrophosphate synthase gene from Arabidopsis thaliana in Escherichia coli. Zhu XF, et al. Plant Cell Physiol, 1997 Mar. PMID 9150607
    2. Five geranylgeranyl diphosphate synthases expressed in different organs are localized into three subcellular compartments in Arabidopsis. Okada K, et al. Plant Physiol, 2000 Apr. PMID 10759500, Free PMC Article
    3. Characterization of the GGPP synthase gene family in Arabidopsis thaliana. Beck G, et al. Plant Mol Biol, 2013 Jul. PMID 23729351
    4. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables dimethylallyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables farnesyltranstransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables farnesyltranstransferase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables geranyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in farnesyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in geranyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in geranylgeranyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within isoprenoid biosynthetic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    geranylgeranyl pyrophosphate synthase 4
    NP_179454.1
    • geranylgeranyl pyrophosphate synthase 4 (GGPS4); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase 2 (TAIR:AT2G23800.1); Has 16777 Blast hits to 16770 proteins in 2973 species: Archae - 341; Bacteria - 9532; Metazoa - 310; Fungi - 469; Plants - 462; Viruses - 12; Other Eukaryotes - 5651 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8083518..8084960 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127420.2 → NP_179454.1  geranylgeranyl pyrophosphate synthase 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179454.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PF45, Q39107, Q9SLG2
      UniProtKB/TrEMBL
      A0A5S9WZB4, A0A654EZ24, A0MEM8
      Conserved Domains (1) summary
      cd00685
      Location:108 → 370
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SLG2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools