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    DEG4 DegP protease 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842875, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DEG4
    Official Full Name
    DegP protease 4
    Primary source
    TAIR:AT1G65640
    Locus tag
    AT1G65640
    See related
    Araport:AT1G65640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DegP protease 4; DegP4; degradation of periplasmic proteins 4; F1E22.2
    Summary
    Encodes a putative DegP protease.
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    Genomic context

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    See DEG4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (24410851..24413527, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Lateral organ boundaries (LOB) domain family protein Neighboring gene DegP protease 3 Neighboring gene miscRNA Neighboring gene Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DegP protease 4
    NP_564857.2
    • DegP protease 4 (DegP4); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 3 (TAIR:AT1G65630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24410851..24413527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334218.1 → NP_001322516.1  DegP protease 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04481, Q1PFG5, Q9SHZ0
      UniProtKB/TrEMBL
      A0A5S9WTG7, A0A654EMZ3
      Conserved Domains (2) summary
      COG0265
      Location:64 → 372
      DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
      pfam17815
      Location:384 → 509
      PDZ_3; PDZ domain

    2. NM_105237.2 → NP_564857.2  DegP protease 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564857.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E3H9
      Conserved Domains (2) summary
      COG0265
      Location:64 → 372
      DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
      pfam17815
      Location:384 → 436
      PDZ_3; PDZ domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SHZ0.1

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