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    vacuolar sorting-associated protein (DUF946) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839298, updated on 18-Sep-2024

    Summary

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    Official Full Name
    vacuolar sorting-associated protein (DUF946)
    Primary source
    TAIR:AT1G04090
    Locus tag
    AT1G04090
    See related
    Araport:AT1G04090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D22.17; F20D22_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (1057041..1059454)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene translocase of outer membrane 22-I Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene indoleacetic acid-induced protein 10 Neighboring gene Subtilase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100290.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    vacuolar sorting-associated protein (DUF946)
    NP_171905.1
    • Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G43950.1); Has 349 Blast hits to 319 proteins in 89 species: Archae - 0; Bacteria - 23; Metazoa - 11; Fungi - 104; Plants - 206; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1057041..1059454
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100290.3 → NP_171905.1  vacuolar sorting-associated protein (DUF946) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171905.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q501D1
      UniProtKB/TrEMBL
      A0A178WMD9, A0A5S9SI94, A0A654EBM6
      Conserved Domains (1) summary
      pfam06101
      Location:21 → 570
      Vps62; Vacuolar protein sorting-associated protein 62
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q501D1.1

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