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    ATS9 non-ATPase subunit 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839789, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATS9
    Official Full Name
    non-ATPase subunit 9
    Primary source
    TAIR:AT1G29150
    Locus tag
    AT1G29150
    See related
    Araport:AT1G29150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    non-ATPase subunit 9; REGULATORY PARTICLE NON-ATPASE 6; RPN6
    Summary
    specifically interacts with FUS6/COP11 via the C-terminal domain of FUS6/COP11 and associates with an ATPase subunit of the 19S proteasome regulatory complex, AtS6A.
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    Genomic context

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    See ATS9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (10180302..10182808)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Hydrolase-like protein family Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene SCAR family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PUB22 and PUB23 U-BOX E3 ligases directly ubiquitinate RPN6, a 26S proteasome lid subunit, for subsequent degradation in Arabidopsis thaliana. Cho SK, et al. Biochem Biophys Res Commun, 2015 Sep 4. PMID 26188517
    2. Characterization of two subunits of Arabidopsis 19S proteasome regulatory complex and its possible interaction with the COP9 complex. Kwok SF, et al. J Mol Biol, 1999 Jan 8. PMID 9878390
    3. COP9 signalosome subunit 7 from Arabidopsis interacts with and regulates the small subunit of ribonucleotide reductase (RNR2). Halimi Y, et al. Plant Mol Biol, 2011 Sep. PMID 21614643
    4. Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes. Yanagawa Y, et al. Genes Dev, 2004 Sep 1. PMID 15342494, Free PMC Article
    5. Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome. Fu H, et al. EMBO J, 2001 Dec 17. PMID 11742986, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RPN6 showed a shorter protein half-life in PUB22 overexpressing plants than in wild-type, and RPN6 was significantly stabilized in pub22pub23 double knockout plants.
      Title: PUB22 and PUB23 U-BOX E3 ligases directly ubiquitinate RPN6, a 26S proteasome lid subunit, for subsequent degradation in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332840.1
    NM_102656.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within protein catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 
    located_in nucleus TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 
    part_of proteasome complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    non-ATPase subunit 9
    NP_174210.1
    • non-ATPase subunit 9 (ATS9); INVOLVED IN: response to cadmium ion, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143); BEST Arabidopsis thaliana protein match is: proteasome family protein (TAIR:AT2G26990.1); Has 870 Blast hits to 851 proteins in 238 species: Archae - 0; Bacteria - 2; Metazoa - 296; Fungi - 224; Plants - 209; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10180302..10182808
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102656.4 → NP_174210.1  non-ATPase subunit 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174210.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81694, Q6XJG1, Q6XJG4, Q9LP45
      UniProtKB/TrEMBL
      A0A178WAE7, A0A5S9WBS8, A0A654EDR6
      Conserved Domains (1) summary
      COG5159
      Location:16 → 418
      RPN6; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

    2. NM_001332840.1 → NP_001323322.1  non-ATPase subunit 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81694, Q6XJG1, Q6XJG4, Q9LP45
      UniProtKB/TrEMBL
      A0A178WAE7, A0A5S9WBS8, A0A654EDR6
      Conserved Domains (1) summary
      COG5159
      Location:16 → 418
      RPN6; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LP45.1

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