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    RNA polymerase Rpb7 N-terminal domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837190, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA polymerase Rpb7 N-terminal domain-containing protein
    Primary source
    TAIR:AT1G06790
    Locus tag
    AT1G06790
    See related
    Araport:AT1G06790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4H5.12; F4H5_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (2087182..2089786)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DREB2A-interacting protein 1 Neighboring gene galacturonosyltransferase 6 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene endonuclease/glycosyl hydrolase Neighboring gene carotenoid isomerase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A partial loss-of-function mutation in an Arabidopsis RNA polymerase III subunit leads to pleiotropic defects. Johnson KC, et al. J Exp Bot, 2016 Apr. PMID 26865731, Free PMC Article
    2. Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants. Takenaka M, et al. Proc Natl Acad Sci U S A, 2012 Mar 27. PMID 22411807, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100556.5
    NM_202047.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within RNA splicing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase Rpb7 N-terminal domain-containing protein
    NP_172164.1
    • RNA polymerase Rpb7 N-terminal domain-containing protein; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7, N-terminal (InterPro:IPR005576), RNA polymerase III, subunit Rpc25 (InterPro:IPR013238); Has 892 Blast hits to 892 proteins in 299 species: Archae - 169; Bacteria - 0; Metazoa - 273; Fungi - 266; Plants - 84; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
    NP_973776.1
    • RNA polymerase Rpb7 N-terminal domain-containing protein; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7, N-terminal (InterPro:IPR005576), RNA polymerase III, subunit Rpc25 (InterPro:IPR013238); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2087182..2089786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100556.5 → NP_172164.1  RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172164.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGX6, Q9M9Y6
      Conserved Domains (2) summary
      COG1095
      Location:1 → 194
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
      cd04330
      Location:2 → 81
      RNAP_III_Rpc25_N; Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP ...

    2. NM_202047.1 → NP_973776.1  RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973776.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HNT3
      Conserved Domains (2) summary
      COG1095
      Location:1 → 163
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
      cd04330
      Location:2 → 81
      RNAP_III_Rpc25_N; Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP ...
    Nucleotide Protein
    Heading Accession and Version

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