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    Pseudouridine synthase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842088, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pseudouridine synthase family protein
    Primary source
    TAIR:AT1G56345
    Locus tag
    AT1G56345
    See related
    Araport:AT1G56345
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14G9.4; F14G9_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (21092993..21094518, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene secretion-associated RAS 1B Neighboring gene calreticulin 1a Neighboring gene Peptide chain release factor 2 Neighboring gene purple acid phosphatase 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-Wide Identification and Expression Analysis of Pseudouridine Synthase Family in Arabidopsis and Maize. Xie Y, et al. Int J Mol Sci, 2022 Feb 28. PMID 35269820, Free PMC Article
    2. Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis. Yu F, et al. Plant Cell, 2008 Jul. PMID 18599582, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001333778.1
    NM_104514.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables pseudouridine synthase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pseudouridine synthase family protein
    NP_176031.2
    • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224); Has 16985 Blast hits to 16836 proteins in 2654 species: Archae - 12; Bacteria - 12887; Metazoa - 225; Fungi - 200; Plants - 183; Viruses - 0; Other Eukaryotes - 3478 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21092993..21094518 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104514.3 → NP_176031.2  Pseudouridine synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176031.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7XA65, Q9C7K8, Q9C7Y0
      UniProtKB/TrEMBL
      A0A178W7M0, A0A5S9WQ93, A0A654EUR2
      Conserved Domains (1) summary
      COG0564
      Location:74 → 316
      RluA; Pseudouridylate synthase, 23S rRNA- or tRNA-specific [Translation, ribosomal structure and biogenesis]

    2. NM_001333778.1 → NP_001322451.1  Pseudouridine synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AU32
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XA65.1

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