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    F-box associated ubiquitination effector family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837806, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box associated ubiquitination effector family protein
    Primary source
    TAIR:AT1G12490
    Locus tag
    AT1G12490
    See related
    Araport:AT1G12490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5O11.24; F5O11_24
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (4260783..4261869)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene zinc ion binding protein Neighboring gene ncRNA Neighboring gene C4-dicarboxylate transporter/malic acid transport protein Neighboring gene ncRNA Neighboring gene Nucleotide-sugar transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The FBA motif-containing protein AFBA1 acts as a novel positive regulator of ABA response in Arabidopsis. Kim YY, et al. Plant Cell Physiol, 2017 Mar 1. PMID 28184867
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101121.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of abscisic acid-activated signaling pathway IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within protein stabilization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box associated ubiquitination effector family protein
    NP_172711.1
    • F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G09650.1); Has 239 Blast hits to 239 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4260783..4261869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101121.1 → NP_172711.1  F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172711.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IDS9, Q9LE79
      Conserved Domains (2) summary
      TIGR01640
      Location:104 → 277
      F_box_assoc_1; F-box protein interaction domain
      cl23987
      Location:209 → 288
      FBA_1; F-box associated
    Nucleotide Protein
    Heading Accession and Version

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