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    RmlC-like cupins superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819765, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RmlC-like cupins superfamily protein
    Primary source
    TAIR:AT3G05950
    Locus tag
    AT3G05950
    See related
    Araport:AT3G05950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2O10.9; F2O10_9
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (1780938..1782007, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene organic solute transporter ostalpha protein (DUF300) Neighboring gene sugar transporter 6 Neighboring gene long-chain acyl-CoA synthetase 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An S-ribonuclease binding protein EBS1 and brassinolide signaling are specifically required for Arabidopsis tolerance to bicarbonate. Chen J, et al. J Exp Bot, 2021 Feb 24. PMID 33165537
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111469.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to alkaline pH IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RmlC-like cupins superfamily protein
    NP_187246.1
    • RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: sperm cell, male gametophyte, root, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G04200.1); Has 1545 Blast hits to 1539 proteins in 111 species: Archae - 0; Bacteria - 53; Metazoa - 0; Fungi - 32; Plants - 1447; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1780938..1782007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111469.3 → NP_187246.1  RmlC-like cupins superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187246.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WPC3, Q9SFF9
      UniProtKB/TrEMBL
      A0A178VI20, A0A5S9X9H8
      Conserved Domains (1) summary
      cd02241
      Location:26 → 221
      cupin_OxOx; Oxalate oxidase (germin), cupin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SFF9.1

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