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    RPA32B Replication protein A, subunit RPA32 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821187, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPA32B
    Official Full Name
    Replication protein A, subunit RPA32
    Primary source
    TAIR:AT3G02920
    Locus tag
    AT3G02920
    See related
    Araport:AT3G02920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRPA32B; F13E7.13; F13E7_13; Replication Protein A 2B; RPA2B
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    Genomic context

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    See RPA32B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (651572..654487, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Low-density receptor-like protein Neighboring gene ncRNA Neighboring gene AIG2-like (avirulence induced gene) family protein Neighboring gene ncRNA Neighboring gene weak chloroplast movement under blue light protein (DUF827) Neighboring gene myb domain protein 107

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis replication protein A 70a is required for DNA damage response and telomere length homeostasis. Takashi Y, et al. Plant Cell Physiol, 2009 Nov. PMID 19812063
    2. IDN2 Interacts with RPA and Facilitates DNA Double-Strand Break Repair by Homologous Recombination in Arabidopsis. Liu M, et al. Plant Cell, 2017 Mar. PMID 28223440, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001337445.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within double-strand break repair via homologous recombination IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Replication protein A, subunit RPA32
    NP_001319455.1
    • RPA32B; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Replication protein A, subunit RPA32 (InterPro:IPR014646), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication protein A, C-terminal (InterPro:IPR014892); BEST Arabidopsis thaliana protein match is: replicon protein A2 (TAIR:AT2G24490.2).
    NP_566188.1
    • RPA32B; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Replication protein A, subunit RPA32 (InterPro:IPR014646), Replication protein A, C-terminal (InterPro:IPR014892), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: replicon protein A2 (TAIR:AT2G24490.2); Has 524 Blast hits to 524 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 241; Fungi - 124; Plants - 108; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      651572..654487 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111162.3 → NP_566188.1  Replication protein A, subunit RPA32 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566188.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFJ8, Q9M8T4
      UniProtKB/TrEMBL
      A0A5S9X8P8
      Conserved Domains (2) summary
      cd04478
      Location:69 → 162
      RPA2_DBD_D; A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be ...
      pfam08784
      Location:161 → 270
      RPA_C; Replication protein A C terminal

    2. NM_001337446.1 → NP_001326669.1  Replication protein A, subunit RPA32 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X8P8, F4IYI1
      Conserved Domains (2) summary
      cd04478
      Location:69 → 162
      RPA2_DBD_D; A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be ...
      pfam08784
      Location:161 → 227
      RPA_C; Replication protein A C terminal

    3. NM_001337445.1 → NP_001319455.1  Replication protein A, subunit RPA32 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X8P8, F4IYI1
      Conserved Domains (2) summary
      cd04478
      Location:69 → 162
      RPA2_DBD_D; A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be ...
      pfam08784
      Location:161 → 227
      RPA_C; Replication protein A C terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LFJ8.1

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