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    SRS4 SHI-related sequence 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816325, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SRS4
    Official Full Name
    SHI-related sequence 4
    Primary source
    TAIR:AT2G18120
    Locus tag
    AT2G18120
    See related
    Araport:AT2G18120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8D23.10; F8D23_10; SHI-related sequence 4
    Summary
    A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
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    Genomic context

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    See SRS4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (7876544..7878072, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Translation elongation factor EF1B/ribosomal protein S6 family protein Neighboring gene miscRNA Neighboring gene purple acid phosphatase 11 Neighboring gene Peroxidase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001335585.1
    NM_127369.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    SHI-related sequence 4
    NP_179404.1
    • SHI-related sequence 4 (SRS4); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT4G36260.1); Has 174 Blast hits to 174 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7876544..7878072 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127369.3 → NP_179404.1  SHI-related sequence 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179404.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SI19
      UniProtKB/TrEMBL
      A0A178VVS9
      Conserved Domains (3) summary
      TIGR01623
      Location:71 → 113
      put_zinc_LRP1; putative zinc finger domain, LRP1 type
      TIGR01624
      Location:157 → 205
      LRP1_Cterm; LRP1 C-terminal domain
      pfam05142
      Location:69 → 207
      DUF702; Domain of unknown function (DUF702)

    2. NM_001335585.1 → NP_001323479.1  SHI-related sequence 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VX85, A0A1P8AXA0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SI19.1

    Gene LinkOut

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