U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Beta-glucosidase, GBA2 type family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822004, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Beta-glucosidase, GBA2 type family protein
    Primary source
    TAIR:AT3G24180
    Locus tag
    AT3G24180
    See related
    Araport:AT3G24180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    20
    Sequence:
    Chromosome: 3; NC_003074.8 (8734611..8741819, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene putative type 1 membrane protein Neighboring gene glutathione-disulfide reductase Neighboring gene Protein kinase superfamily protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    2. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001035680.1
    NM_113323.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glucosylceramidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in glucosylceramide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Beta-glucosidase, GBA2 type family protein
    NP_001030757.1
    • Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: glucosylceramidase activity, catalytic activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT5G49900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_189060.2
    • Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: glucosylceramidase activity, catalytic activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT5G49900.1); Has 952 Blast hits to 742 proteins in 175 species: Archae - 79; Bacteria - 320; Metazoa - 186; Fungi - 2; Plants - 267; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8734611..8741819 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113323.4 → NP_189060.2  Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189060.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XFN8, A0A654FAD9, Q8VZ08
      Conserved Domains (2) summary
      pfam04685
      Location:535 → 896
      DUF608; Glycosyl-hydrolase family 116, catalytic region
      pfam12215
      Location:102 → 421
      Glyco_hydr_116N; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term

    2. NM_001035680.1 → NP_001030757.1  Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030757.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XFN8, A0A654FAD9, Q8VZ08
      Conserved Domains (2) summary
      pfam04685
      Location:535 → 896
      DUF608; Glycosyl-hydrolase family 116, catalytic region
      pfam12215
      Location:102 → 421
      Glyco_hydr_116N; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools