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    paired amphipathic helix SIN3-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822521, updated on 18-Sep-2024

    Summary

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    Official Full Name
    paired amphipathic helix SIN3-like protein
    Primary source
    TAIR:AT3G28870
    Locus tag
    AT3G28870
    See related
    Araport:AT3G28870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (10890355..10891839)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily B19 Neighboring gene pseudo Neighboring gene serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like protein Neighboring gene serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    paired amphipathic helix SIN3-like protein
    NP_189529.1
    • CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Sec63 domain (InterPro:IPR004179); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24260.1); Has 531 Blast hits to 527 proteins in 118 species: Archae - 0; Bacteria - 10; Metazoa - 251; Fungi - 29; Plants - 170; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10890355..10891839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113808.1 → NP_189529.1  paired amphipathic helix SIN3-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189529.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FI30, F4J0F5, Q9LJW9
      Conserved Domains (1) summary
      smart00973
      Location:8 → 342
      Sec63; Sec63 Brl domain
    Nucleotide Protein
    Heading Accession and Version

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