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    aluminum induced protein with YGL and LRDR motifs [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821857, updated on 18-Sep-2024

    Summary

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    Official Full Name
    aluminum induced protein with YGL and LRDR motifs
    Primary source
    TAIR:AT3G22850
    Locus tag
    AT3G22850
    See related
    Araport:AT3G22850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (8088810..8090470)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene heat shock transcription factor A6B Neighboring gene Chlorophyll A-B binding family protein Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene eukaryotic translation initiation factor 3 subunit C2 Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_113185.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    aluminum induced protein with YGL and LRDR motifs
    NP_188925.1
    • Aluminium induced protein with YGL and LRDR motifs; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT5G43830.1); Has 1324 Blast hits to 1324 proteins in 483 species: Archae - 0; Bacteria - 791; Metazoa - 46; Fungi - 0; Plants - 333; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8088810..8090470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113185.4 → NP_188925.1  aluminum induced protein with YGL and LRDR motifs [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188925.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VIL9, A0A384LGT1, Q9LIL3
      Conserved Domains (1) summary
      pfam12481
      Location:2 → 226
      DUF3700; Aluminium induced protein
    Nucleotide Protein
    Heading Accession and Version

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