U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    XSP1 xylem serine peptidase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827949, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    XSP1
    Official Full Name
    xylem serine peptidase 1
    Primary source
    TAIR:AT4G00230
    Locus tag
    AT4G00230
    See related
    Araport:AT4G00230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6N15.3; F6N15_3; SUBTILISIN-TYPE SERINE ENDOPEPTIDASE XSP1; xylem serine peptidase 1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See XSP1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (93743..97467)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Lateral organ boundaries (LOB) domain family protein Neighboring gene miscRNA Neighboring gene ARM repeat superfamily protein Neighboring gene DNA-binding storekeeper protein-related transcriptional regulator

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001340236.1
    NM_116240.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    xylem serine peptidase 1
    NP_567155.1
    • xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      93743..97467
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116240.5 → NP_567155.1  xylem serine peptidase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567155.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81324, Q9LLL8
      UniProtKB/TrEMBL
      A0A178V1S4
      Conserved Domains (3) summary
      cd04852
      Location:113 → 569
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:346 → 467
      PA_subtilisin_like; PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from ...
      pfam05922
      Location:38 → 115
      Inhibitor_I9; Peptidase inhibitor I9

    2. NM_001340236.1 → NP_001328541.1  xylem serine peptidase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4Y8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LLL8.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.