U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LpxD1 Trimeric LpxA-like enzymes superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825869, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LpxD1
    Official Full Name
    Trimeric LpxA-like enzymes superfamily protein
    Primary source
    TAIR:AT4G05210
    Locus tag
    AT4G05210
    See related
    Araport:AT4G05210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtLpxD1; C17L7.130; C17L7_130; lipid X D1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LpxD1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (2682613..2685896)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene photosystem II subunit Q-2 Neighboring gene kinesin 5 Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 25 Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Ubiquitin-like superfamily protein Neighboring gene Ubiquitin-like superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Pathway for lipid A biosynthesis in Arabidopsis thaliana resembling that of Escherichia coli. Li C, et al. Proc Natl Acad Sci U S A, 2011 Jul 12. PMID 21709257, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid X metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Trimeric LpxA-like enzymes superfamily protein
    NP_192430.2
    • Trimeric LpxA-like enzymes superfamily protein; FUNCTIONS IN: transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hexapeptide transferase, conserved site (InterPro:IPR018357), Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzymes superfamily protein (TAIR:AT4G21220.1); Has 11511 Blast hits to 11440 proteins in 1956 species: Archae - 52; Bacteria - 7646; Metazoa - 8; Fungi - 29; Plants - 63; Viruses - 3; Other Eukaryotes - 3710 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      2682613..2685896
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340544.1 → NP_001328366.1  Trimeric LpxA-like enzymes superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4F5, A0A5S9XPP5

    2. NM_001340545.1 → NP_001328365.1  Trimeric LpxA-like enzymes superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4E8, A0A5S9XPP5

    3. NM_116760.2 → NP_192430.2  Trimeric LpxA-like enzymes superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192430.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JGP6, Q9M0X4
      UniProtKB/TrEMBL
      A0A5S9XPP5
      Conserved Domains (1) summary
      cd03352
      Location:93 → 289
      LbH_LpxD; UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2, ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JGP6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.