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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828432, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT4G23330
    Locus tag
    AT4G23330
    See related
    Araport:AT4G23330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16G20.30
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (12191851..12195159)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 23 Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 24 Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene transmembrane protein, putative (DUF239)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_118462.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001320046.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2365 (InterPro:IPR019314).
    NP_194064.2
    • BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1); Has 63 Blast hits to 55 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12191851..12195159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341602.1 → NP_001320046.1  uncharacterized protein AT4G23330 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V280, A0A178V2K2, A0A384L9P5, F4JNI2
      Conserved Domains (1) summary
      pfam10157
      Location:45 → 139
      BORCS6; BLOC-1-related complex sub-unit 6

    2. NM_001341603.1 → NP_001329084.1  uncharacterized protein AT4G23330 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V280, A0A178V2K2, A0A384L9P5, F4JNI2
      Conserved Domains (1) summary
      pfam10157
      Location:45 → 139
      BORCS6; BLOC-1-related complex sub-unit 6

    3. NM_001341604.1 → NP_001329083.1  uncharacterized protein AT4G23330 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V280, A0A178V2K2, A0A384L9P5, F4JNI2
      Conserved Domains (1) summary
      pfam10157
      Location:45 → 139
      BORCS6; BLOC-1-related complex sub-unit 6

    4. NM_118462.2 → NP_194064.2  uncharacterized protein AT4G23330 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194064.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FS02, F4JNI1, O65484
    Nucleotide Protein
    Heading Accession and Version

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